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PD Dr. med. Jakob Usemann

Deputy Head of the Department of Respiratory Medicine

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Since 2025
Deputy Head of Paediatric Respiratory Medicine (100 %), University Children’s Hospital of Basel (UKBB)

Since 2024
Senior Registrar in Paediatric Respiratory Medicine (100 %), University Children’s Hospital of the Two Basels (UKBB)

Since 2023
Senior Registrar in Paediatric Respiratory Medicine (40 %), University Children’s Hospital of the Two Basels (UKBB)

Since 2021
Senior Registrar in Paediatric Respiratory Medicine (60 %), University Children’s Hospital Zurich

2019–2021
Senior Registrar (40 %), University Children’s Hospital of the Two Basels (UKBB)

2019–2021
Fellow in Paediatric Respiratory Medicine (60 %), University Children’s Hospital Zurich

2018–2019
Junior Doctor, University Children’s Hospital of the Two Basels (UKBB)

2017–2018
Postdoctoral researcher, University Children’s Hospital of Basel (UKBB)

2014–2017
PhD student, University Children’s Hospital of Basel (UKBB)

2011–2014
Junior Doctor in Paediatric Respiratory Medicine and Immunology, Charité Berlin

2025
Transfer to the University of Basel

2025
Certificate in Respiratory Polygraphy (SGP)

2023
Good Clinical Practice (GCP), Basic Level and Sponsor-Investigator Level

2022
Continuing Professional Development: Rigid and Flexible Paediatric Bronchoscopy, European Respiratory Society

2021
Specialisation in Paediatric Pneumology (FMH) and the European Examination in Paediatric Respiratory Medicine

2020
Venia docendi (private lecturership), University of Zurich

2019
Specialist qualification in paediatrics and adolescent medicine (FMH)

2019
Paediatric Advanced Life Support (PALS), University Hospital of Zurich

2019
Training in teaching methodology, Faculty of Medicine, University of Zurich

2017
PhD in Epidemiology, University of Basel
Doctoral thesis: Immunological and Genetic Determinants of Pulmonary Outcome in School-Aged Children
Supervisor: Prof. Dr Urs Frey, MD
Conclusion: summa cum laude

2016
Medical thesis, Justus Liebig University, Giessen
Title: All-trans Retinoic Acid Recruits Smad3 to Drive TGF-β Signalling in Lung Fibroblasts: Implications for the Management of Bronchopulmonary Dysplasia with Retinoids
Supervisor: Prof. Dr Werner Seeger
Conclusion: magna cum laude

2010
United States Medical Licensing Examination (USMLE)
Step 1: 85/100
Step 2: 95/100

2010
Paediatrics, L'Ospedale dei Bambini Meyer, Florence

2010
Internal Medicine/Oncology, Memorial Sloan Kettering Centre, New York, USA

2009
Surgery, Hirslanden Clinic, Zurich

2007
General clinical training, University of Padua, Italy

2004 - 2010
Medical studies, Justus Liebig University, Giessen

Functions

  • Member of the Scientific Board of the Clinical Research Collaboration Working Group of the European Respiratory Society (ERS)
  • Chair of the Pulmonary Function Section of the German Society for Paediatric Pneumology
  • Delegate for Respiratory Medicine at the Swiss Society for Paediatrics

Memberships

  • Swiss Society for Paediatric Pneumology
  • European Respiratory Society (ERS)
  • German Society for Paediatric Pneumology
  • European Society for Paediatric Research

Supervised dissertations:

  • Amanda Gisler; PhD University of Basel, accepted 2022: "Main and interaction effects of gaseous and particulate pollutants on respiratory health in children"
  • Andrea Suter; MD University of Basel, accepted 2019: "Variability of respiratory parameters in preterm infants and correlations with respiratory diseases in infancy: A cohort study"
  • Desirée Demann; MD University of Bern, accepted 2018: "Interrupter technique in infancy: Higher airway resistance and lower short-term variability in preterm infants compared to term infants"

Teaching activity:

  • Clinical skills training for medical students, University Children's Hospital Zurich
    Teaching at the "Studienstiftung des Deutschen Volkes": "Krankheit, Evidenz, Nichtwissen. Current issues in the philosophy of medicine."
  • Lessons for medical students during "Science Month (WIMO)" at the University of Basel

Professional journals

Reviewer for numerous international specialist journals, including:

  • New England Journal of Medicine
  • The Lancet Planetary Health
  • American Journal of Respiratory and Critical Care Medicine
  • European Respiratory Journal
  • Journal of Applied Physiology
  • British Medical Journal
  • Paediatrics
  • Clinical and Translational Immunology
  • Pediatric Allergy and Immunology
  • Environmental Research
  • Respiratory Medicine
  • Pediatric Pulmonology

Publishing activities

  • Member of the Editorial Board of PLOS ONE

Funding organisations

  • Expert for the Lung Foundation Netherlands

Securing competitively awarded, peer-reviewed external funding totalling CHF 3.4 million as Principal Investigator or Co-Principal Investigator over the last ten years.

  1. Swiss National Science Foundation: Prematurity-associated lung disease: from the origins of the disease to longitudinal monitoring through to adulthood (CHF 1.8 million; 09/2026 Principal Investigator)
  2. Foundation for Children with Cancer, Regio Basiliensis: Novel lung function testing and lung imaging to identify the causes of pulmonary dysfunction in paediatric cancer patients (CHF 35,000; 07/2025 Principal Investigator)
  3. Lunge Zurich: Expanding access to novel contrast-agent-free functional pulmonary MRI for paediatric patients. (CHF 60,000; June 2023, Co-investigator)
  4. Swiss Cancer Research: Innovative lung function testing and lung imaging to identify the causes of pulmonary dysfunction in paediatric cancer patients. (CHF 366,000; July 2022; Principal Investigator)
  5. Vertex Unrestricted Grant: An in-depth analysis of the treatment effects of Trikafta (elaxacaftor, tezacaftor and ivacaftor) on disease-specific breath markers using SESI-HRMS, as well as sputum inflammation and the microbiome, in children and adolescents aged 12 and over with cystic fibrosis. (CHF 220,000 as co-investigator, 09/2021)
  6. Swiss Cancer Research: Pulmonary dysfunction following childhood cancer: assessing early-stage disease (Phase 2). (CHF 370,000; July 2021; Co-investigator)
  7. Palatin Foundation: Combining lung function, lung imaging and breath analysis to investigate pulmonary dysfunction in paediatric cancer patients. (CHF 200,000; 09/2020; Principal Investigator)
  8. Swiss Lung Association: Effects of air pollution on lung function and lung growth in Swiss children. (CHF 60,000; July 2020; Principal Investigator)
  9. Lung League Berne: Luftibus: the relationship between smoking behaviour at school and respiratory health outcomes in Swiss children. (CHF 63,000; June 2020; Co-investigator)
  10. University Children’s Hospital Zurich, Research Centre for Children: Interdisciplinary assessment of patients with a single ventricle: how do the heart, lungs and patients adapt to an unphysiological circulation? (CHF 66,000; 01/2020; Co-investigator)
  11. University of Basel Research Fund: Exhaled breath analysis in paediatric patients exposed to environmental tobacco smoke (EBATS). (CHF 80,000; 08/2018; Principal Investigator)
  12. University Children’s Hospital Basel “Special Programme” Grant: Non-invasive urinary eicosanoid profiles for the study of acute respiratory tract infections in infancy. (CHF 65,000; December 2017; Principal Investigator)
  13. German, Swiss and Austrian Society for Paediatric Pneumology: “Cluster analysis of risk factors for respiratory symptoms in the first year of life and associations with the development of asthma in school-age children. (CHF 20,000; 04/2016; Principal Investigator)

2022
Pfizer Research Prize Clinical Research Award (for PhD student Amanda Gisler, under my supervision)

2021
Swiss Aerosol Award

2020
Poster Prize of the German Society for Paediatric Pneumology

2019
Talent Award from the Swiss Society of Paediatrics

2018
Poster Prize from the Swiss Society of Paediatrics

2017
Research Prize from the University Children’s Hospital of the Two Basels

Current promotions

Gabriele Raffler
PhD candidate (joint supervision)

Completed PhDs and dissertations

2025
Christine Schneider, University of Bern
Prospective Multicentre Cohort Study of Early Pulmonary Dysfunction in Paediatric Cancer Patients

2022
Amanda Gisler, PhD, University of Basel
Main and Interaction Effects of Gaseous and Particulate Pollutants on Children’s Respiratory Health

2019
Andrea Suter, MD, University of Basel
Variability in Tidal Breathing Parameters in Preterm Infants and Its Association with Respiratory Morbidity during Infancy: A Cohort Study

2018
Desirée Demann, MD, University of Bern
Interrupted Breathing in Infancy: Higher Upper Airway Resistance and Lower Short-Term Variability in Preterm versus Term Infants

Teaching activity

Since 2024
Lecturer at the University of Basel

Ongoing

  • Teaching for medical students at the UKBB (AP teaching, OSCE examinations)
  • Lectures during the University of Basel’s Science Month (WIMO)
  • Clinical Skills Training for medical students at the University Children’s Hospital Zurich
  • Lecturer at the German National Academic Foundation on the topic:
    „Illness, Evidence, Ignorance. Current Issues in the Philosophy of Medicine“
Counselling hotline for child and youth emergencies

The Medgate Kids Line provides quick and uncomplicated medical advice if your child is unwell. The medical team of our partner Medgate is available to you by telephone around the clock.

058 387 78 82
(billing via health insurance)

For emergencies abroad: Call the emergency number of your health insurance company. You will find this number on your health insurance card.

More information: On the Page of the emergency ward you will find everything you need to know about behaviour in emergencies, typical childhood illnesses and waiting times.

Important emergency numbers

144 Outpatient clinic
145 Tox Info Suisse (Poisonings)
117 Police
118 Fire brigade

UKBB

University Children's Hospital Basel
Spitalstrasse 33
4056 Basel | CH

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